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Status:

Task completed successfully.

Submission info:

Task mode - auto
Username:pledorSet of templates:inactive
Task token:f629affe700c4507b4d2934e9eb77ff9Lysozyme included:no
Date of submission:11/15/12 09:53 AMBranch cutoff:0.01
Date finished:11/16/12 03:49 AMMin e-value:1e-100
Query length:319Max e-value:1e-10

Query sequence:
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Results:


Template selection:
TemplateClustalW2 ScoreIdentityGlobal SimilaritySelectedViewDownload
human kappa-opioid 'tructure of the human kappa-opioid receptor in complex with JDTic' (Wu et al., 2012)
4DJH_A
2523.530.2YesViewDownload
human nociceptin 'Structure of the nociceptin/orphanin FQ receptor in complex with a peptide mimetic.' (Thompson et al., 2012)
4EA3_A
2522.880.19YesViewDownload
human beta2-adrenergic 'High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor.' (Cherezov et al., 2007)
2RH1_A
2522.980.18NoViewDownload
mouse delta-opioid 'Structure of the delta opioid receptor bound to naltrindole' (Granier et al., 2012)
4EJ4_A
2522.120.18NoViewDownload
turkey beta1-adrenergic 'Structure of a Beta1-Adrenergic G-Protein-Coupled Receptor.' (Warne et al., 2008)
2VT4_B
2422.670.18NoViewDownload
human dopamine 'Structure of the human dopamine d3 receptor in complex with a d2/d3 selective antagonist.' (Chien et al., 2010)
3PBL_A
2721.230.16NoViewDownload
human chemokine 'Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists.' (Wu et al., 2010)
3ODU_A
2422.020.16NoViewDownload
mouse mu-opioid 'Crystal structure of the {mu}-opioid receptor bound to a morphinan antagonist.' (Manglik et al., 2012)
4DKL_A
2420.560.17NoViewDownload
human adenosine 'The 2.6 Angstrom Crystal Structure of a Human A2A Adenosine Receptor Bound to an Antagonist.' (Jaakola et al., 2008)
3EML_A
2221.410.13NoViewDownload
rat muscarinic 'Structure and dynamics of the M3 muscarinic acetylcholine receptor.' (Kruse et al., 2012)
4DAJ_A
2519.080.15NoViewDownload
bovine rhodopsin 'The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure' (Okada et al., 2004)
1U19_A
2219.660.16NoViewDownload
human muscarinic 'Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist.' (Haga et al., 2012)
3UON_A
2117.850.13NoViewDownload
human histamine 'Structure of the human histamine H1 receptor complex with doxepin.' (Shimamura et al., 2011)
3RZE_A
2217.70.12NoViewDownload
human sphingosine 'Crystal structure of a lipid G protein-coupled receptor.' (Hanson et al., 2012)
3V2Y_A
1817.860.06NoViewDownload
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Alignments generated with selected templates:
TemplateAlignment MethodIdentityGlobal SimilarityNon-anchored alignmentAnchored AlignmentNon-anchored AlignmentAnchored AlignmentSelected
human kappa-opioid 'tructure of the human kappa-opioid receptor in complex with JDTic' (Wu et al., 2012)
4DJH_A
profile-profile21.560.19ViewViewDownloadDownloadNo
human kappa-opioid 'tructure of the human kappa-opioid receptor in complex with JDTic' (Wu et al., 2012)
4DJH_A
multiple SA22.910.19ViewViewDownloadDownloadYes
human kappa-opioid 'tructure of the human kappa-opioid receptor in complex with JDTic' (Wu et al., 2012)
4DJH_A
simple pairwise SA22.60.2ViewViewDownloadDownloadNo
human nociceptin 'Structure of the nociceptin/orphanin FQ receptor in complex with a peptide mimetic.' (Thompson et al., 2012)
4EA3_A
profile-profile21.150.15ViewViewDownloadDownloadNo
human nociceptin 'Structure of the nociceptin/orphanin FQ receptor in complex with a peptide mimetic.' (Thompson et al., 2012)
4EA3_A
multiple SA22.570.18ViewViewDownloadDownloadYes
human nociceptin 'Structure of the nociceptin/orphanin FQ receptor in complex with a peptide mimetic.' (Thompson et al., 2012)
4EA3_A
simple pairwise SA22.430.18ViewViewDownloadDownloadNo
Download table

Final Alignment:
File missing: alignment_convergence.log. Sorry.

Final Alignment in the PIR format:
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Loops to be refined (Modeller):
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Generated Modeller Models:
PDB file:Model DOPE ScoreLoop DOPE ScoreJSmol ViewerDownload PDB
gpcrm_model_01.pdb-39411.30469-9669.88477JSmolDownload
gpcrm_model_02.pdb-39411.30469-9412.79883JSmolDownload
gpcrm_model_03.pdb-39350.15625-9580.99414JSmolDownload
gpcrm_model_04.pdb-39350.15625-9356.39551JSmolDownload
gpcrm_model_05.pdb-39283.46875-9944.46387JSmolDownload
gpcrm_model_06.pdb-39283.46875-9799.64355JSmolDownload
gpcrm_model_07.pdb-39233.39062-9667.74219JSmolDownload
gpcrm_model_08.pdb-39233.39062-9664.69629JSmolDownload
gpcrm_model_09.pdb-38979.48438-9377.05273JSmolDownload
gpcrm_model_10.pdb-38979.48438-9083.31543JSmolDownload
Download table

Loops to be refined (Rosetta):
File missing: rosetta/rosetta-loops.csv. Sorry.

Generated Rosetta Models:
PDB file:Model DOPE ScoreLoop DOPE ScoreRosetta ScoreJSmol ViewerDownload PDB
gpcrm_model_r01.pdb-39283.46875-9944.46387419.616JSmolDownload
gpcrm_model_r02.pdb-39283.46875-9799.64355475.385JSmolDownload
gpcrm_model_r03.pdb-39283.46875-9799.64355520.724JSmolDownload
gpcrm_model_r04.pdb-39283.46875-9799.64355549.543JSmolDownload
gpcrm_model_r05.pdb-39283.46875-9799.64355562.727JSmolDownload
gpcrm_model_r06.pdb-39283.46875-9799.64355579.402JSmolDownload
gpcrm_model_r07.pdb-39283.46875-9799.64355579.917JSmolDownload
gpcrm_model_r08.pdb-39283.46875-9799.64355602.251JSmolDownload
gpcrm_model_r09.pdb-39283.46875-9799.64355671.896JSmolDownload
gpcrm_model_r10.pdb-39283.46875-9944.46387712.671JSmolDownload
Download table

Sequences in the query profile. Sequences are sorted by e-value in descending order. The first sequence in the file is your query sequence.
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Anchored realignment - a log file.
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Modeller run script (1)
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Modeller run script (2)
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Modeller Run - a log file.
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Rosetta Run - a log file.
Download

Alignments & Models - zip file.
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